Aboveground biomass mapping in French Guiana by combining remote sensing, forest inventories and environmental data

International audienceMapping forest aboveground biomass (AGB) has become an important task, particularly for the reporting of carbon stocks and changes. AGB can be mapped using synthetic aperture radar data (SAR) or passive optical data. However, these data are insensitive to high AGB levels (>150 Mg/ha, and >300 Mg/ha for P-band), which are commonly found in tropical forests. Studies have mapped the rough variations in AGB by combining optical and environmental data at regional and global scales. Nevertheless, these maps cannot represent local variations in AGB in tropical forests. In this paper, we hypothesize that the problem of misrepresenting local variations in AGB and AGB estimation with good precision occurs because of both methodological limits (signal saturation or dilution bias) and a lack of adequate calibration data in this range of AGB values. We test this hypothesis by developing a calibrated regression model to predict variations in high AGB values (mean >300 Mg/ha) in French Guiana by a methodological approach for spatial extrapolation with data from the optical geoscience laser altimeter system (GLAS), forest inventories, radar, optics, and environmental variables for spatial inter-and extrapolation. Given their higher point count, GLAS data allow a wider coverage of AGB values. We find that the metrics from GLAS footprints are correlated with field AGB estimations (R 2 =0.54, RMSE=48.3 Mg/ha) with no bias for high values. First, predictive models, including remote-sensing, environmental variables and spatial correlation functions, allow us to obtain "wall-to-wall" AGB maps over French Guiana with an RMSE for the in situ AGB estimates of ~51 Mg/ha and R²=0.48 at a 1-km grid size. We conclude that a calibrated regression model based on GLAS with dependent environmental data can produce good AGB predictions even for high AGB values if the calibration data fit the AGB range. We also demonstrate that small temporal and spatial mismatches between field data and GLAS footprints are not a problem for regional and global calibrated regression models because field data aim to predict large and deep tendencies in AGB variations from environmental gradients and do not aim to represent high but stochastic and temporally limited variations from forest dynamics. Thus, we advocate including a greater variety of data, even if less precise and shifted, to better represent high AGB values in global models and to improve the fitting of these models for high values

The European Space Agency BIOMASS mission: Measuring forest above-ground biomass from space

The primary objective of the European Space Agency's 7th Earth Explorer mission, BIOMASS, is to determine the worldwide distribution of forest above-ground biomass (AGB) in order to reduce the major uncertainties in calculations of carbon stocks and fluxes associated with the terrestrial biosphere, including carbon fluxes associated with Land Use Change, forest degradation and forest regrowth. To meet this objective it will carry, for the first time in space, a fully polarimetric P-band synthetic aperture radar (SAR). Three main products will be provided: global maps of both AGB and forest height, with a spatial resolution of 200 m, and maps of severe forest disturbance at 50 m resolution (where “global” is to be understood as subject to Space Object tracking radar restrictions). After launch in 2022, there will be a 3-month commissioning phase, followed by a 14-month phase during which there will be global coverage by SAR tomography. In the succeeding interferometric phase, global polarimetric interferometry Pol-InSAR coverage will be achieved every 7 months up to the end of the 5-year mission. Both Pol-InSAR and TomoSAR will be used to eliminate scattering from the ground (both direct and double bounce backscatter) in forests. In dense tropical forests AGB can then be estimated from the remaining volume scattering using non-linear inversion of a backscattering model. Airborne campaigns in the tropics also indicate that AGB is highly correlated with the backscatter from around 30 m above the ground, as measured by tomography. In contrast, double bounce scattering appears to carry important information about the AGB of boreal forests, so ground cancellation may not be appropriate and the best approach for such forests remains to be finalized. Several methods to exploit these new data in carbon cycle calculations have already been demonstrated. In addition, major mutual gains will be made by combining BIOMASS data with data from other missions that will measure forest biomass, structure, height and change, including the NASA Global Ecosystem Dynamics Investigation lidar deployed on the International Space Station after its launch in December 2018, and the NASA-ISRO NISAR L- and S-band SAR, due for launch in 2022. More generally, space-based measurements of biomass are a core component of a carbon cycle observation and modelling strategy developed by the Group on Earth Observations. Secondary objectives of the mission include imaging of sub-surface geological structures in arid environments, generation of a true Digital Terrain Model without biases caused by forest cover, and measurement of glacier and icesheet velocities. In addition, the operations needed for ionospheric correction of the data will allow very sensitive estimates of ionospheric Total Electron Content and its changes along the dawn-dusk orbit of the mission

Coverage of high biomass forests by the ESA BIOMASS mission under defense restrictions

The magnitude of the global terrestrial carbon pool and related fluxes to and from the atmosphere are still poorly known. The European Space Agency P-band radar BIOMASS mission will help to reduce this uncertainty by providing unprecedented information on the distribution of forest above-ground biomass (AGB), particularly in the tropics where the gaps are greatest and knowledge is most needed. Mission selection was made in full knowledge of coverage restrictions over Europe, North and Central America imposed by the US Department of Defense Space Objects Tracking Radar (SOTR) stations. Under these restrictions, only 3% of AGB carbon stock coverage is lost in the tropical forest biome, with this biome representing 66% of global AGB carbon stocks in 2005. The loss is more significant in the temperate (72%), boreal (37%) and subtropical (29%) biomes, with these accounting for approximately 12%, 15% and 7%, respectively, of the global forest AGB carbon stocks. In terms of global carbon cycle modelling, there is minimal impact in areas of high AGB density, since mainly lower biomass forests in cooler climates are affected. In addition, most areas affected by the SOTR stations are located in industrialized countries with well-developed national forest inventories, so that extensive information on AGB is already available. Hence the main scientific objectives of the BIOMASS mission are not seriously compromised. Furthermore, several space sensors that can estimate AGB in lower biomass forests are in orbit or planned for launch between now and the launch of BIOMASS in 2021, which will help to fill the gaps in mission coverage

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Safety and efficacy of fluoxetine on functional outcome after acute stroke (AFFINITY): a randomised, double-blind, placebo-controlled trial

Background Trials of fluoxetine for recovery after stroke report conflicting results. The Assessment oF FluoxetINe In sTroke recoverY (AFFINITY) trial aimed to show if daily oral fluoxetine for 6 months after stroke improves functional outcome in an ethnically diverse population. Methods AFFINITY was a randomised, parallel-group, double-blind, placebo-controlled trial done in 43 hospital stroke units in Australia (n=29), New Zealand (four), and Vietnam (ten). Eligible patients were adults (aged ≥18 years) with a clinical diagnosis of acute stroke in the previous 2–15 days, brain imaging consistent with ischaemic or haemorrhagic stroke, and a persisting neurological deficit that produced a modified Rankin Scale (mRS) score of 1 or more. Patients were randomly assigned 1:1 via a web-based system using a minimisation algorithm to once daily, oral fluoxetine 20 mg capsules or matching placebo for 6 months. Patients, carers, investigators, and outcome assessors were masked to the treatment allocation. The primary outcome was functional status, measured by the mRS, at 6 months. The primary analysis was an ordinal logistic regression of the mRS at 6 months, adjusted for minimisation variables. Primary and safety analyses were done according to the patient's treatment allocation. The trial is registered with the Australian New Zealand Clinical Trials Registry, ACTRN12611000774921. Findings Between Jan 11, 2013, and June 30, 2019, 1280 patients were recruited in Australia (n=532), New Zealand (n=42), and Vietnam (n=706), of whom 642 were randomly assigned to fluoxetine and 638 were randomly assigned to placebo. Mean duration of trial treatment was 167 days (SD 48·1). At 6 months, mRS data were available in 624 (97%) patients in the fluoxetine group and 632 (99%) in the placebo group. The distribution of mRS categories was similar in the fluoxetine and placebo groups (adjusted common odds ratio 0·94, 95% CI 0·76–1·15; p=0·53). Compared with patients in the placebo group, patients in the fluoxetine group had more falls (20 [3%] vs seven [1%]; p=0·018), bone fractures (19 [3%] vs six [1%]; p=0·014), and epileptic seizures (ten [2%] vs two [<1%]; p=0·038) at 6 months. Interpretation Oral fluoxetine 20 mg daily for 6 months after acute stroke did not improve functional outcome and increased the risk of falls, bone fractures, and epileptic seizures. These results do not support the use of fluoxetine to improve functional outcome after stroke

Les impacts de décorrélation temporelle sur la répétition pass tomographique dans une forêt tropicale

International audienceThe objective of this paper is to provide a better understanding of the impact of temporal decorrelation on the tomography phase of the P-band Synthetic Aperture Radar (SAR) BIOMASS mission, 7-th Earth Explorer of the European Space Agency. In this context, in the framework of the Phase A studies of the BIOMASS mission, the airborne TropiSAR 2009 and ground-based TropiScat 2011 experiments were conducted over the site of the tropical forest Paracou, French Guiana. The P-band SAR tomographic data acquired during TropiSAR campaign allowed us to reconstruct 3-D high resolution data, whereas TropiScat experiment provided vertical temporal coherence of the vegetation. These data therefore allow us to generate a BIOMASS P-band SAR data stack that accounts for both the 6 MHz bandwidth limit and temporal decorrelation. To do this, we developed a tomographic simulator, which can combine 3-D high resolution data from TropiSAR and the temporal decorrelation from TropiScat data-sets, to provide the most realistic temporal BIOMASS tomographic data. The resulting tomograms and forest heights were observed to change acceptably as long as the revisit time is 4 days or less. Therefore, the revisit time for the BIOMASS tomographic phase at 3-4 days as proposed should be feasible.L'objectif de cette communication est de fournir une meilleure compréhension de l'impact de la décorrélation temporelle sur la phase de tomographie du radar à ouverture synthétique (SAR) mission Biomass P-bande, Earth Explorer 7 de l'Agence spatiale européenne. Dans ce contexte, dans le cadre des études de phase A de la mission sur la biomasse, TropiSAR aéroportée 2009 et 2011 TropiScat expériences basées au sol ont été réalisés sur le site de la forêt tropicale de Paracou, en Guyane française. Les données SAR tomographiques P-bande acquises au cours de la campagne Tropisar nous ont permis de reconstituer les données à haute résolution 3-D, alors que l'expérience TropiScat fourni cohérence temporelle verticale de la végétation. Ces données permettent donc de générer une pile de données SAR BIOMASSE P-groupe qui représente à la fois la limite de bande passante de 6 MHz et décorrélation temporelle. Pour ce faire, nous avons développé un simulateur de tomographie, qui peuvent combiner les données 3-D haute résolution de Tropisar et la décorrélation temporelle de TropiScat ensembles de données, afin de fournir les données les plus réalistes BIOMASSE tomographiques temporelles. Les tomographies et forestiers hauteurs résultantes ont été observés pour changer acceptable aussi longtemps que le temps de revisite est de 4 jours ou moins. Par conséquent, le temps de revisite pour la phase tomographique de biomasse à 3-4 jours tel que proposé devrait être possible

Tomosar platform supports for Sentinel-1 tops persistent scatterers interferometry

International audienceDeveloping and improving methods to monitor both natural and non-natural environments such as forest and urban in space and time is a timely challenge. To overcome this challenge, we created a software platform - TomoSAR. The kernel of this platform supports the entire processing from SAR, Interferometry, Polarimetry, to Tomography (so called TomoSAR). The objective of this paper is to introduce this platform about its capability in Persistent Scatterers Interferometry (PSI) technique to estimate subsidence using TOPS Sentinel-1 data